add limits

This commit is contained in:
antoniofilipovic
2023-10-10 18:51:24 +02:00
parent e6f854396c
commit 11ee19516a
10 changed files with 294 additions and 45 deletions

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@@ -111,6 +111,13 @@ enum mgp_error mgp_global_aligned_alloc(size_t size_in_bytes, size_t alignment,
/// The behavior is undefined if `ptr` is not a value returned from a prior
/// mgp_global_alloc() or mgp_global_aligned_alloc().
void mgp_global_free(void *p);
/// State of the graph database.
struct mgp_graph;
enum mgp_error mgp_track_thread_allocations(struct mgp_graph *graph, const char *thread_id);
enum mgp_error mgp_untrack_thread_allocations(struct mgp_graph *graph, const char *);
///@}
/// @name Operations on mgp_value
@@ -851,9 +858,6 @@ enum mgp_error mgp_edge_set_properties(struct mgp_edge *e, struct mgp_map *prope
enum mgp_error mgp_edge_iter_properties(struct mgp_edge *e, struct mgp_memory *memory,
struct mgp_properties_iterator **result);
/// State of the graph database.
struct mgp_graph;
/// Get the vertex corresponding to given ID, or NULL if no such vertex exists.
/// Resulting vertex must be freed using mgp_vertex_destroy.
/// Return mgp_error::MGP_ERROR_UNABLE_TO_ALLOCATE if unable to allocate the vertex.

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@@ -267,7 +267,12 @@ void UpdateThreadToTransactionId(const std::thread::id &thread_id, uint64_t tran
std::ostringstream oss;
oss << thread_id;
thread_id_to_transaction_id[oss.str()] = transaction_id;
std::cout << "set:" << oss.str() << std::endl;
std::cout << "set tracking for thread:" << oss.str() << ", on transaction: " << transaction_id << std::endl;
}
void UpdateThreadToTransactionId(const char *thread_id, uint64_t transaction_id) {
thread_id_to_transaction_id[std::string(thread_id)] = transaction_id;
std::cout << "set tracking:" << std::string(thread_id) << ", on transaction: " << transaction_id << std::endl;
}
void ResetThreadToTransactionId(const std::thread::id &thread_id) {
@@ -276,6 +281,8 @@ void ResetThreadToTransactionId(const std::thread::id &thread_id) {
thread_id_to_transaction_id.erase(oss.str());
}
void ResetThreadToTransactionId(const char *thread_id) { thread_id_to_transaction_id.erase(std::string(thread_id)); }
void PurgeUnusedMemory() {
#if USE_JEMALLOC
mallctl("arena." STRINGIFY(MALLCTL_ARENAS_ALL) ".purge", nullptr, nullptr, nullptr, 0);

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@@ -27,6 +27,8 @@ bool AddTrackingOnArena(unsigned);
bool RemoveTrackingOnArena(unsigned);
void UpdateThreadToTransactionId(const std::thread::id &, uint64_t);
void ResetThreadToTransactionId(const std::thread::id &);
void UpdateThreadToTransactionId(const char *, uint64_t);
void ResetThreadToTransactionId(const char *);
// TODO(AF) : Do we need arena to transaction id and transaction_id to tracker?
inline std::unordered_map<std::string, uint64_t> thread_id_to_transaction_id;

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@@ -21,6 +21,14 @@ namespace memgraph::query {
SubgraphDbAccessor::SubgraphDbAccessor(query::DbAccessor db_accessor, Graph *graph)
: db_accessor_(db_accessor), graph_(graph) {}
void SubgraphDbAccessor::TrackThreadAllocations(const char *thread_id) {
return db_accessor_.TrackThreadAllocations(thread_id);
}
void SubgraphDbAccessor::UntrackThreadAllocations(const char *thread_id) {
return db_accessor_.UntrackThreadAllocations(thread_id);
}
storage::PropertyId SubgraphDbAccessor::NameToProperty(const std::string_view name) {
return db_accessor_.NameToProperty(name);
}

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@@ -17,6 +17,7 @@
#include <cppitertools/filter.hpp>
#include <cppitertools/imap.hpp>
#include "memory/memory_control.hpp"
#include "query/exceptions.hpp"
#include "storage/v2/edge_accessor.hpp"
#include "storage/v2/id_types.hpp"
@@ -372,6 +373,18 @@ class DbAccessor final {
void FinalizeTransaction() { accessor_->FinalizeTransaction(); }
void TrackThreadAllocations(const char *thread_id) {
memgraph::memory::UpdateThreadToTransactionId(thread_id, *accessor_->GetTransactionId());
auto arena = memgraph::memory::GetArenaForThread();
memgraph::memory::AddTrackingOnArena(arena);
}
void UntrackThreadAllocations(const char *thread_id) {
memgraph::memory::ResetThreadToTransactionId(thread_id);
auto arena = memgraph::memory::GetArenaForThread();
memgraph::memory::RemoveTrackingOnArena(arena);
}
std::optional<uint64_t> GetTransactionId() { return accessor_->GetTransactionId(); }
VerticesIterable Vertices(storage::View view) { return VerticesIterable(accessor_->Vertices(view)); }
@@ -645,6 +658,10 @@ class SubgraphDbAccessor final {
static SubgraphDbAccessor *MakeSubgraphDbAccessor(DbAccessor *db_accessor, Graph *graph);
void TrackThreadAllocations(const char *thread_id);
void UntrackThreadAllocations(const char *thread_id);
storage::PropertyId NameToProperty(std::string_view name);
storage::LabelId NameToLabel(std::string_view name);

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@@ -3540,3 +3540,16 @@ mgp_error mgp_log(const mgp_log_level log_level, const char *output) {
throw std::invalid_argument{fmt::format("Invalid log level: {}", log_level)};
});
}
mgp_error mgp_track_thread_allocations(mgp_graph *graph, const char *thread_id) {
return WrapExceptions([&]() {
std::visit([thread_id](auto *db_accessor) -> void { db_accessor->TrackThreadAllocations(thread_id); }, graph->impl);
});
}
mgp_error mgp_untrack_thread_allocations(mgp_graph *graph, const char *thread_id) {
return WrapExceptions([&]() {
std::visit([thread_id](auto *db_accessor) -> void { db_accessor->UntrackThreadAllocations(thread_id); },
graph->impl);
});
}

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@@ -3,3 +3,7 @@ target_include_directories(global_memory_limit PRIVATE ${CMAKE_SOURCE_DIR}/inclu
add_library(global_memory_limit_proc SHARED global_memory_limit_proc.c)
target_include_directories(global_memory_limit_proc PRIVATE ${CMAKE_SOURCE_DIR}/include)
add_library(query_memory_limit_proc_multi_thread SHARED query_memory_limit_proc_multi_thread.cpp)
target_include_directories(query_memory_limit_proc_multi_thread PRIVATE ${CMAKE_SOURCE_DIR}/include) #todo link with utils not to use onscopeexit

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@@ -0,0 +1,110 @@
// Copyright 2023 Memgraph Ltd.
//
// Use of this software is governed by the Business Source License
// included in the file licenses/BSL.txt; by using this file, you agree to be bound by the terms of the Business Source
// License, and you may not use this file except in compliance with the Business Source License.
//
// As of the Change Date specified in that file, in accordance with
// the Business Source License, use of this software will be governed
// by the Apache License, Version 2.0, included in the file
// licenses/APL.txt.
#include <atomic>
#include <exception>
#include <functional>
#include <mgp.hpp>
#include <mutex>
#include <sstream>
#include <string>
#include <thread>
#include <utility>
#include <vector>
#include "mg_procedure.h"
template <typename Callable>
class [[nodiscard]] OnScopeExit {
public:
explicit OnScopeExit(Callable &&function) : function_{std::forward<Callable>(function)}, doCall_{true} {}
OnScopeExit(OnScopeExit const &) = delete;
OnScopeExit(OnScopeExit &&) = delete;
OnScopeExit &operator=(OnScopeExit const &) = delete;
OnScopeExit &operator=(OnScopeExit &&) = delete;
~OnScopeExit() {
if (doCall_) function_();
}
void Disable() { doCall_ = false; }
private:
std::function<void()> function_;
bool doCall_;
};
template <typename Callable>
OnScopeExit(Callable &&) -> OnScopeExit<Callable>;
// TODO(af) fix this hack
std::atomic<int> num_allocations{0};
void AllocFunc(mgp_graph *graph) {
std::ostringstream oss;
oss << std::this_thread::get_id();
std::string thread_id = oss.str();
[[maybe_unused]] const enum mgp_error tracking_error = mgp_track_thread_allocations(graph, thread_id.c_str());
const size_t two_sixty_eight_mb = 1 << 28;
void *ptr = nullptr;
OnScopeExit<std::function<void(void)>> cleanup{[&ptr]() {
if (nullptr == ptr) {
return;
}
mgp_global_free(ptr);
}};
const enum mgp_error alloc_err = mgp_global_alloc(two_sixty_eight_mb, (void **)(&ptr));
if (alloc_err != mgp_error::MGP_ERROR_UNABLE_TO_ALLOCATE) {
num_allocations.fetch_add(1, std::memory_order_relaxed);
}
[[maybe_unused]] const enum mgp_error untracking_error = mgp_untrack_thread_allocations(graph, thread_id.c_str());
}
void DualThread(mgp_list *args, mgp_graph *memgraph_graph, mgp_result *result, mgp_memory *memory) {
mgp::MemoryDispatcherGuard guard{memory};
const auto arguments = mgp::List(args);
const auto record_factory = mgp::RecordFactory(result);
try {
std::vector<std::thread> threads;
for (int i = 0; i < 2; i++) {
threads.emplace_back(AllocFunc, memgraph_graph);
}
for (int i = 0; i < 2; i++) {
threads[i].join();
}
auto new_record = record_factory.NewRecord();
new_record.Insert("allocated_all", num_allocations.load(std::memory_order_relaxed) == 2);
// ASSERT only one exception should occur
} catch (std::exception &e) {
record_factory.SetErrorMessage(e.what());
}
}
extern "C" int mgp_init_module(struct mgp_module *module, struct mgp_memory *memory) {
try {
mgp::memory = memory;
AddProcedure(DualThread, std::string("dual_thread").c_str(), mgp::ProcedureType::Read, {},
{mgp::Return(std::string("allocated_all").c_str(), mgp::Type::Bool)}, module, memory);
} catch (const std::exception &e) {
return 1;
}
return 0;
}
extern "C" int mgp_shutdown_module() { return 0; }

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@@ -0,0 +1,65 @@
// Copyright 2023 Memgraph Ltd.
//
// Use of this software is governed by the Business Source License
// included in the file licenses/BSL.txt; by using this file, you agree to be bound by the terms of the Business Source
// License, and you may not use this file except in compliance with the Business Source License.
//
// As of the Change Date specified in that file, in accordance with
// the Business Source License, use of this software will be governed
// by the Apache License, Version 2.0, included in the file
// licenses/APL.txt.
#include <gflags/gflags.h>
#include <algorithm>
#include <iostream>
#include <mgclient.hpp>
#include "utils/logging.hpp"
#include "utils/timer.hpp"
DEFINE_uint64(bolt_port, 7687, "Bolt port");
DEFINE_uint64(timeout, 120, "Timeout seconds");
DEFINE_bool(multi_db, false, "Run test in multi db environment");
int main(int argc, char **argv) {
google::SetUsageMessage("Memgraph E2E Query Memory Limit In Multi-Thread For Global Allocators");
gflags::ParseCommandLineFlags(&argc, &argv, true);
memgraph::logging::RedirectToStderr();
mg::Client::Init();
auto client =
mg::Client::Connect({.host = "127.0.0.1", .port = static_cast<uint16_t>(FLAGS_bolt_port), .use_ssl = false});
if (!client) {
LOG_FATAL("Failed to connect!");
}
if (FLAGS_multi_db) {
client->Execute("CREATE DATABASE clean;");
client->DiscardAll();
client->Execute("USE DATABASE clean;");
client->DiscardAll();
client->Execute("MATCH (n) DETACH DELETE n;");
client->DiscardAll();
}
MG_ASSERT(
client->Execute("CALL libquery_memory_limit_proc_multi_thread.dual_thread() YIELD allocated_all RETURN "
"allocated_all QUERY MEMORY LIMIT 500MB"));
bool error{false};
try {
auto result_rows = client->FetchAll();
if (result_rows) {
auto row = *result_rows->begin();
std::cout << row[0].ValueBool() << std::endl;
}
} catch (const mg::ClientException &e) {
std::cout << e.what() << std::endl;
error = true;
}
MG_ASSERT(error, "Error should have happend");
return 0;
}

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@@ -23,50 +23,69 @@ disk_cluster: &disk_cluster
- "STORAGE MODE ON_DISK_TRANSACTIONAL"
validation_queries: []
args_query_limit: &args_query_limit
- "--bolt-port"
- *bolt_port
- "--storage-gc-cycle-sec=180"
- "--log-level=TRACE"
in_memory_query_limit_cluster: &in_memory_query_limit_cluster
cluster:
main:
args: *args_query_limit
log_file: "memory-e2e.log"
setup_queries: []
validation_queries: []
workloads:
- name: "Memory control"
binary: "tests/e2e/memory/memgraph__e2e__memory__control"
args: ["--bolt-port", *bolt_port, "--timeout", "180"]
<<: *in_memory_cluster
# - name: "Memory control"
# binary: "tests/e2e/memory/memgraph__e2e__memory__control"
# args: ["--bolt-port", *bolt_port, "--timeout", "180"]
# <<: *in_memory_cluster
- name: "Memory control multi database"
binary: "tests/e2e/memory/memgraph__e2e__memory__control"
args: ["--bolt-port", *bolt_port, "--timeout", "180", "--multi-db", "true"]
<<: *in_memory_cluster
# - name: "Memory control multi database"
# binary: "tests/e2e/memory/memgraph__e2e__memory__control"
# args: ["--bolt-port", *bolt_port, "--timeout", "180", "--multi-db", "true"]
# <<: *in_memory_cluster
- name: "Memory limit for modules upon loading"
binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc"
# - name: "Memory limit for modules upon loading"
# binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc"
# args: ["--bolt-port", *bolt_port, "--timeout", "180"]
# proc: "tests/e2e/memory/procedures/"
# <<: *in_memory_cluster
# - name: "Memory limit for modules upon loading multi database"
# binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc"
# args: ["--bolt-port", *bolt_port, "--timeout", "180", "--multi-db", "true"]
# proc: "tests/e2e/memory/procedures/"
# <<: *in_memory_cluster
# - name: "Memory limit for modules inside a procedure"
# binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc_proc"
# args: ["--bolt-port", *bolt_port, "--timeout", "180"]
# proc: "tests/e2e/memory/procedures/"
# <<: *in_memory_cluster
# - name: "Memory limit for modules inside a procedure multi database"
# binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc_proc"
# args: ["--bolt-port", *bolt_port, "--timeout", "180", "--multi-db", "true"]
# proc: "tests/e2e/memory/procedures/"
# <<: *in_memory_cluster
# - name: "Memory limit for modules upon loading for on-disk storage"
# binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc"
# args: ["--bolt-port", *bolt_port, "--timeout", "180"]
# proc: "tests/e2e/memory/procedures/"
# <<: *disk_cluster
# - name: "Memory limit for modules inside a procedure for on-disk storage"
# binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc_proc"
# args: ["--bolt-port", *bolt_port, "--timeout", "180"]
# proc: "tests/e2e/memory/procedures/"
# <<: *disk_cluster
- name: "Memory control query limit"
binary: "tests/e2e/memory/memgraph__e2e__memory__limit_query_alloc_proc_multi_thread"
args: ["--bolt-port", *bolt_port, "--timeout", "180"]
proc: "tests/e2e/memory/procedures/"
<<: *in_memory_cluster
- name: "Memory limit for modules upon loading multi database"
binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc"
args: ["--bolt-port", *bolt_port, "--timeout", "180", "--multi-db", "true"]
proc: "tests/e2e/memory/procedures/"
<<: *in_memory_cluster
- name: "Memory limit for modules inside a procedure"
binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc_proc"
args: ["--bolt-port", *bolt_port, "--timeout", "180"]
proc: "tests/e2e/memory/procedures/"
<<: *in_memory_cluster
- name: "Memory limit for modules inside a procedure multi database"
binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc_proc"
args: ["--bolt-port", *bolt_port, "--timeout", "180", "--multi-db", "true"]
proc: "tests/e2e/memory/procedures/"
<<: *in_memory_cluster
- name: "Memory limit for modules upon loading for on-disk storage"
binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc"
args: ["--bolt-port", *bolt_port, "--timeout", "180"]
proc: "tests/e2e/memory/procedures/"
<<: *disk_cluster
- name: "Memory limit for modules inside a procedure for on-disk storage"
binary: "tests/e2e/memory/memgraph__e2e__memory__limit_global_alloc_proc"
args: ["--bolt-port", *bolt_port, "--timeout", "180"]
proc: "tests/e2e/memory/procedures/"
<<: *disk_cluster
<<: *in_memory_query_limit_cluster